Special Course in Bioinformatics
BASIC DATA
course listing
A - main register
course code
YSX9030
course title in Estonian
Bioinformaatika erikursus
course title in English
Special Course in Bioinformatics
course volume CP
2.00
ECTS credits
3.00
to be declared
yes
fully online course
yes
assessment form
Examination
teaching semester
autumn - spring
language of instruction
Estonian
English
Study programmes that contain the course
code of the study programme version
course compulsory
LALD22/22
no
Structural units teaching the course
LK - Department of Chemistry and Biotechnology
Course description link
Timetable link
View the timetable
Version:
VERSION SPECIFIC DATA
course aims in Estonian
Kursuse eesmärk on anda osalejatele vajalikud oskused ja teadmised R-i iseseisvaks kasutamiseks.
course aims in English
The aim of the course is to give the participants everything necessary to be able to independently work in R.
learning outcomes in the course in Est.
Õppeaine läbinud üliõpilane:
- töötab R-is ja RStudios;
- kirjutab funktsioone R-is;
- mõistab ggplot2 paketi graafika süntaksi kontseptsioone;
- mõistab andmete puhastamise kontseptsioone;
- filtreerib andmeid ja grupeerib neid paketi dplyr abil;
- raporteerib tulemusi RMarkdown/Quarto abil.
learning outcomes in the course in Eng.
After completing the course the student:
- works in R and RStudio;
- writes functions in R;
- understands the concept of grammar of graphics and works with ggplot2;
- understands the concept of tidy data and converts data between long and wide format;
- filters data and summarizes it by groups with dplyr;
- has minimum necessary understanding of RMarkdown/Quarto.
brief description of the course in Estonian
R on üks juhtivamaid ja võimsamaid andmeanalüüsi tööriistu, kuid selle õppimisega alustamine võib olla raske. Sissejuhatav kursus aitab üliõpilastel üle saada raskeimast, kattes kõik vajaliku, et R-iga tööd alustada. Kursusel läbitakse kaasaegne töövoog R-is kasutades pakette dplyr andmete puhastamiseks, tehakse graafikuid andmete esmaseks vaatluseks ja hilisemaks avaldamiseks ning antakse ülevaade Rmarkdown/Qarto võimalustest erinevat tüüpi failide kujundamisel ning analüüsi tulemuste raporteerimisel.
brief description of the course in English
R is one of the leading and most powerful tools for data analysis, but it is considered to have a rather steep initial learning curve. This introductory course helps you over the hardest part, covering everything necessary to get started with R. We will also go through the modern workflow in R using dplyr for data wrangling, grammar of graphics for both exploratory and publication-ready data visualization and give a basic overview of Rmarkdown/Quarto, which helps to integrate the statistical analysis in report-writing.
type of assessment in Estonian
Kursusetöö
type of assessment in English
Course work
independent study in Estonian
Moodle'is antud materjalide õppimine ja ülesannete täitmine.
independent study in English
Learning the materials handed out during the lecture.
study literature
Garrett Grolemund, Hadley Wickham. R for Data Science, O’Reilly.
study forms and load
daytime study: weekly hours
2.0
session-based study work load (in a semester):
lectures
0.0
lectures
-
practices
1.0
practices
-
exercises
1.0
exercises
-
lecturer in charge
-
LECTURER SYLLABUS INFO
semester of studies
teaching lecturer / unit
language of instruction
Extended syllabus or link to Moodle or to home page
2023/2024 spring
Agne Velthut-Meikas, LK - Department of Chemistry and Biotechnology
English
    COURSE_YSX9030_Agne V.M_.pdf 
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    2021/2022 spring
    Olli-Pekka Smolander, LK - Department of Chemistry and Biotechnology
    English
      2020/2021 spring
      Olli-Pekka Smolander, LK - Department of Chemistry and Biotechnology
      English
        2019/2020 spring
        Olli-Pekka Smolander, LK - Department of Chemistry and Biotechnology
        English, Estonian
          2019/2020 autumn
          Agne Velthut-Meikas, LK - Department of Chemistry and Biotechnology
          Estonian
            2015/2016 autumn
            Anu Aaspõllu, LK - Department of Chemistry and Biotechnology
            Estonian
              2014/2015 spring
              Anu Aaspõllu, LK - Department of Chemistry and Biotechnology
              Estonian
                2014/2015 autumn
                Anu Aaspõllu, LK - Department of Chemistry and Biotechnology
                Estonian
                  Course description in Estonian
                  Course description in English